PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Ciclev10001303m
Common NameCICLE_v10001303mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 418aa    MW: 47973.4 Da    PI: 8.1156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Ciclev10001303mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.00017157180123
                      EEETTTTEEESSHHHHHHHHHH.T CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                      y C+ Cg+ ++++ +Lk+H +  H
  Ciclev10001303m 157 YICGVCGRKCKTNLDLKKHFKQlH 180
                      89*****************98766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.10103.7E-575147IPR029060PIN domain-like
PROSITE profilePS5015710.575157185IPR007087Zinc finger, C2H2
PROSITE patternPS000280159180IPR007087Zinc finger, C2H2
CDDcd061676.60E-8171311No hitNo description
Gene3DG3DSA:3.40.50.10103.7E-5242309IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MKWLCSSLDA RSLKPLVRYN KSDFHFSQSL VLEKLPTHFN TKLALKPSKC CIKTSSASAS  60
IDIDMVRNKQ GIYTQKQNNK VVVLWDLDNK PPRGPPYDAA MSLRRVAERF GEVTDISAYA  120
NRHAFIHLPQ WVIQERRERK QFDILERRGV AVPNDPYICG VCGRKCKTNL DLKKHFKQLH  180
ERERQKKLNR MKSLKGKKRQ KYKERYISGN DKYNEAARSL LKPKVGYGLG SELRRAGVFV  240
KTVRDKPQAA DWALKRQMQH SMSSGVDWMF LVSDDNDFKE MLRKARDANL GTVVVGDSNR  300
GLGQHADLWV PWIEVENGEL TERDLVPRTR RTTTEDFERD GLGLFSLTEF DGVVGFEDET  360
DLDSVVNELV AERTEFGGVR ISMFSEGEEE EDYWVTEEAG GDYLLEGGEL EEQDSYF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Ccl.100240.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006434724.10.0hypothetical protein CICLE_v10001303mg
TrEMBLV4V7880.0V4V788_9R
TrEMBLA0A067GWV60.0A0A067GWV6_CITSI; Uncharacterized protein
STRINGPOPTR_0014s02520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125842429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-165C2H2-like zinc finger protein